| Protein ZmALF5 | |
|---|---|
|
ZmALF5 is a protein in the Alfin-like family.
|
|
| Information | |
| TF Name: | ZmALF5 |
| Species: | Maize |
| TF Family: | Alfin-like |
| Gene Name(Synonym): | ALF5 |
| Uniprot ID: | B6SNE5 |
| Subgenome: | 1 |
Protein ZmALF5
ZmALF5 is a protein in the Alfin-like family.
| Overview of domains present in v5 transcripts | |||
|---|---|---|---|
| Alfin-like | PF00628 | PF12165 | |
| Zm00001eb288280_T001 |  | | |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d038208 | DAPseq |  |
sequence | fimo | position |
| Zm00001d038208 | DAPseq |  |
sequence | fimo | position |
| Zm00001d038208 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d038208 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmALF5 is the regulator
Interactions where ZmALF5 is the target
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Zm00001eb288280_T001 from maize genome v5
Amino Acid Sequence
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MDPGAGAHYSARTAEEVFRDFRGRRAGMIKALTNDVEKFYQLCDPEKENLCLYGYPNETWEVTLPAEEVPPEIPEPALGI
NFARDGMNEKDWLALVAVHSDAWLLAVAFYFAARFGFDKEARRRLFNMINNLPTIFEVATGVAKKQNKEKEPNNTSKSNK
PSSKMTTRPESHLKATKVAPPKDEDDESGEEYEEEEERDNTLCGSCGTNDGKDEFWICCDSCERWYHGKCVKITPARAEH
IKHYKCPDCSNKRARA
MDPGAGAHYSARTAEEVFRDFRGRRAGMIKALTNDVEKFYQLCDPEKENLCLYGYPNETWEVTLPAEEVPPEIPEPALGI
NFARDGMNEKDWLALVAVHSDAWLLAVAFYFAARFGFDKEARRRLFNMINNLPTIFEVATGVAKKQNKEKEPNNTSKSNK
PSSKMTTRPESHLKATKVAPPKDEDDESGEEYEEEEERDNTLCGSCGTNDGKDEFWICCDSCERWYHGKCVKITPARAEH
IKHYKCPDCSNKRARA
MDPGAGAHYSARTAEEVFRDFRGRRAGMIKALTNDVEKFYQLCDPEKENLCLYGYPNETWEVTLPAEEVPPEIPEPALGI
NFARDGMNEKDWLALVAVHSDAWLLAVAFYFAARFGFDKEARRRLFNMINNLPTIFEVATGVAKKQNKEKEPNNTSKSNK
PSSKMTTRPESHLKATKVAPPKDEDDESGEEYEEEEERDNTLCGSCGTNDGKDEFWICCDSCERWYHGKCVKITPARAEH
IKHYKCPDCSNKRARA
MDPGAGAHYSARTAEEVFRDFRGRRAGMIKALTNDVEKFYQLCDPEKENLCLYGYPNETWEVTLPAEEVPPEIPEPALGI
NFARDGMNEKDWLALVAVHSDAWLLAVAFYFAARFGFDKEARRRLFNMINNLPTIFEVATGVAKKQNKEKEPNNTSKSNK
PSSKMTTRPESHLKATKVAPPKDEDDESGEEYEEEEERDNTLCGSCGTNDGKDEFWICCDSCERWYHGKCVKITPARAEH
IKHYKCPDCSNKRARA
MDPGAGAHYSARTAEEVFRDFRGRRAGMIKALTNDVEKFYQLCDPEKENLCLYGYPNETWEVTLPAEEVPPEIPEPALGI
NFARDGMNEKDWLALVAVHSDAWLLAVAFYFAARFGFDKEARRRLFNMINNLPTIFEVATGVAKKQNKEKEPNNTSKSNK
PSSKMTTRPESHLKATKVAPPKDEDDESGEEYEEEEERDNTLCGSCGTNDGKDEFWICCDSCERWYHGKCVKITPARAEH
IKHYKCPDCSNKRARA
MDPGAGAHYSARTAEEVFRDFRGRRAGMIKALTNDVEKFYQLCDPEKENLCLYGYPNETWEVTLPAEEVPPEIPEPALGI
NFARDGMNEKDWLALVAVHSDAWLLAVAFYFAARFGFDKEARRRLFNMINNLPTIFEVATGVAKKQNKEKEPNNTSKSNK
PSSKMTTRPESHLKATKVAPPKDEDDESGEEYEEEEERDNTLCGSCGTNDGKDEFWICCDSCERWYHGKCVKITPARAEH
IKHYKCPDCSNKRARA
MDPGAGAHYSARTAEEVFRDFRGRRAGMIKALTNDVEKFYQLCDPEKENLCLYGYPNETWEVTLPAEEVPPEIPEPALGI
NFARDGMNEKDWLALVAVHSDAWLLAVAFYFAARFGFDKEARRRLFNMINNLPTIFEVATGVAKKQNKEKEPNNTSKSNK
PSSKMTTRPESHLKATKVAPPKDEDDESGEEYEEEEERDNTLCGSCGTNDGKDEFWICCDSCERWYHGKCVKITPARAEH
IKHYKCPDCSNKRARA
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF12165 |
|
| PF00628 |
|
| Alfin-like |
|
| Hover here to show all domains | |
Nucleotide Sequence
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GTATGCGACCCTGTTTCCTGTCTCC...
GTATGCGACCCTGTTTCCTGTCTCCTACCCTCTTGCGGTCTTGCCAGCGCCCCTTCCTCCCTTCGTCTCCGCCGCCGCGGACTCCTCGCCGGAACCCTAAATGGACCCCGGCGCCGGTGCACACTACTCCGCCCGTACCGCGGAGGAAGTCTTCCGCGATTTCCGCGGCCGCCGCGCGGGCATGATCAAGGCCCTCACCAACGATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAACTTTGCCAGCAGAGGAAGTTCCTCCAGAGATCCCTGAACCAGCTTTGGGTATAAACTTTGCTAGGGATGGCATGAACGAGAAGGATTGGTTGGCGTTAGTTGCTGTCCACAGCGATGCCTGGTTACTAGCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCGACTGGGGTTGCCAAGAAACAAAACAAGGAGAAGGAACCCAATAATACCAGCAAAAGCAACAAACCAAGTTCGAAAATGACAACAAGACCCGAGTCTCATTTGAAGGCGACAAAAGTGGCGCCCCCTAAGGATGAAGATGATGAGAGCGGTGAAGAGTATGAAGAAGAGGAAGAGCGTGATAACACCTTATGTGGATCCTGTGGAACAAATGACGGCAAGGACGAATTCTGGATCTGTTGTGATAGTTGCGAGCGGTGGTACCATGGGAAGTGTGTCAAGATCACGCCTGCACGAGCTGAGCACATCAAGCACTACAAATGCCCAGATTGCAGCAACAAGAGGGCAAGAGCCTAGCACCAAGCCCTGCTGTGACTCTGGAGTGAAGTAAGCGCCAAATCATTGATGTCTGCAGATATATGCCTAGCTGTCTAGCTTGTAGACTTGCTTTCCATTTGGAATGAACGCTGTTGATTCACTCGGTTGCCCTCAGCAGCTCATGTTGCTCAGGCTTAATTGTGTTTAATGTTTTACTAGCGAAACAAAATGTGCCAGTGTGTTGCATCGGAGCGTATATTTTATTATCCGGTAATCGTACCCATAGCAAACTTGTCTATACGTTGCAACAGGACGTATTATTGTGCGGTTATTTAAGGCTAGCCATTTTTGTTTGA
GRMZM2G016817_T01 from maize genome v3
Amino Acid Sequence
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MDPGAGAHYSARTAEEVFRDFRGRRAGMIKALTNDVEKFYQLCDPGESARPPRGRRQSLC
Nucleotide Sequence
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ATTGCCATCTCTAAACCTCACCCCT...
ATTGCCATCTCTAAACCTCACCCCTCCCTAGTATGCGACCCTGTTTCCTGTCTCCTACCCTCTTGCGGTCTTGCCAGCGCCCCTTCCTCCCTTCGTCTCCGCCGCCGCGGACTCCTCGCCGGAACCCTAAATGGACCCCGGCGCCGGTGCACACTACTCCGCCCGTACCGCGGAGGAAGTCTTCCGCGATTTCCGCGGCCGCCGCGCGGGCATGATCAAGGCCCTCACCAACGATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGGTGAGTCTGCTCGACCTCCTCGGGGCCGCCGACAGTCACTTTGCTAG
GRMZM2G016817_T02 from maize genome v3
Amino Acid Sequence
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MDPGAGAHYSARTAEEVFRDFRGRRAGMIKALTNDVEKFYQLCDPEKENLCLYGYPNETWEVTLPAEEVPPEIPEPALGI
NFARDGMNEKDWLALVAVHSDAWLLAVAFYFAARFGFDKEARRRLFNMINNLPTIFEVATGVAKKQNKEKEPNNTSKSNK
PSSKMTTRPESHLKATKVAPPKDEDDESGEEYEEEEERDNTLCGSCGTNDGKDEFWICCDSCERWYHGKCVKITPARAEH
IKHYKCPDCSNKRARA
Nucleotide Sequence
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ATTGCCATCTCTAAACCTCACCCCT...
ATTGCCATCTCTAAACCTCACCCCTCCCTAGTATGCGACCCTGTTTCCTGTCTCCTACCCTCTTGCGGTCTTGCCAGCGCCCCTTCCTCCCTTCGTCTCCGCCGCCGCGGACTCCTCGCCGGAACCCTAAATGGACCCCGGCGCCGGTGCACACTACTCCGCCCGTACCGCGGAGGAAGTCTTCCGCGATTTCCGCGGCCGCCGCGCGGGCATGATCAAGGCCCTCACCAACGATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAACTTTGCCAGCAGAGGAAGTTCCTCCAGAGATCCCTGAACCAGCTTTGGGTATAAACTTTGCTAGGGATGGCATGAACGAGAAGGATTGGTTGGCGTTAGTTGCTGTCCACAGCGATGCCTGGTTACTAGCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCGACTGGGGTTGCCAAGAAACAAAACAAGGAGAAGGAACCCAATAATACCAGCAAAAGCAACAAACCAAGTTCGAAAATGACAACAAGACCCGAGTCTCATTTGAAGGCGACAAAAGTGGCGCCCCCTAAGGATGAAGATGATGAGAGCGGTGAAGAGTATGAAGAAGAGGAAGAGCGTGATAACACCTTATGTGGATCCTGTGGAACAAATGACGGCAAGGACGAATTCTGGATCTGTTGTGATAGTTGCGAGCGGTGGTACCATGGGAAGTGTGTCAAGATCACGCCTGCACGAGCTGAGCACATCAAGCACTACAAATGCCCAGATTGCAGCAACAAGAGGGCAAGAGCCTAGCACCAAGCCCTGCTGTGACTCTGGAGTGAAGTAAGCGCCAAATCATTGATGTCTGCAGATATATGCCTAGCTGTCTAGCTTGTAGACTTGCTTTCCATTTGGAATGAACGCTGTTGATTCACTCGGTTGCCCTCAGCAGCTCATGTTGCTCAGGCTTAATTGTGTTTAATGTTTTACTAGCGAAACAAAATGTGCCAGTGTGTTGCATCGGAGCGTATATTTTATTATCCGGTAATCGTACCCATAGCAAACTTGTCTATACGTTGCAACAGGACGTATTATTGTGCGGTTATTTAAGGCTAGCCATTTTTGTTTGACTAAAA
Zm00001d038208_T001 from maize genome v4
Amino Acid Sequence
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MDPGAGAHYSARTAEEVFRDFRGRRAGMIKALTNDVEKFYQLCDPEKENLCLYGYPNETWEVTLPAEEVPPEIPEPALGI
NFARDGMNEKDWLALVAVHSDAWLLAVAFYFAARFGFDKEARRRLFNMINNLPTIFEVATGVAKKQNKEKEPNNTSKSNK
PSSKMTTRPESHLKATKVAPPKDEDDESGEEYEEEEERDNTLCGSCGTNDGKDEFWICCDSCERWYHGKCVKITPARAEH
IKHYKCPDCSNKRARA
Nucleotide Sequence
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ACCCATTGCCATCTCTAAACCTCAC...
ACCCATTGCCATCTCTAAACCTCACCCCTCCCTAGTATGCGACCCTGTTTCCTGTCTCCTACCCTCTTGCGGTCTTGCCAGCGCCCCTTCCTCCCTTCGTCTCCGCCGCCGCGGACTCCTCGCCGGAACCCTAAATGGACCCCGGCGCCGGTGCACACTACTCCGCCCGTACCGCGGAGGAAGTCTTCCGCGATTTCCGCGGCCGCCGCGCGGGCATGATCAAGGCCCTCACCAACGATGTGGAGAAGTTCTACCAGCTGTGCGACCCCGAAAAGGAAAACTTGTGCCTTTATGGCTACCCCAACGAAACATGGGAAGTAACTTTGCCAGCAGAGGAAGTTCCTCCAGAGATCCCTGAACCAGCTTTGGGTATAAACTTTGCTAGGGATGGCATGAACGAGAAGGATTGGTTGGCGTTAGTTGCTGTCCACAGCGATGCCTGGTTACTAGCTGTTGCATTCTACTTTGCAGCCCGGTTTGGGTTTGACAAAGAGGCCAGGCGGCGACTCTTCAACATGATAAATAACTTGCCCACAATATTTGAAGTAGCGACTGGGGTTGCCAAGAAACAAAACAAGGAGAAGGAACCCAATAATACCAGCAAAAGCAACAAACCAAGTTCGAAAATGACAACAAGACCCGAGTCTCATTTGAAGGCGACAAAAGTGGCGCCCCCTAAGGATGAAGATGATGAGAGCGGTGAAGAGTATGAAGAAGAGGAAGAGCGTGATAACACCTTATGTGGATCCTGTGGAACAAATGACGGCAAGGACGAATTCTGGATCTGTTGTGATAGTTGCGAGCGGTGGTACCATGGGAAGTGTGTCAAGATCACGCCTGCACGAGCTGAGCACATCAAGCACTACAAATGCCCAGATTGCAGCAACAAGAGGGCAAGAGCCTAGCACCAAGCCCTGCTGTGACTCTGGAGTGAAGTAAGCGCCAAATCATTGATGTCTGCAGATATATGCCTAGCTGTCTAGCTTGTAGACTTGCTTTCCATTTGGAATGAACGCTGTTGATTCACTCGGTTGCCCTCAGCAGCTCATGTTGCTCAGGCTTAATTGTGTTTAATGTTTTACTAGCGAAACAAAATGTGCCAGTGTGTTGCATCGGAGCGTATATTTTATTATCCGGTAATCGTAC
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